HGGHHBGX2_n01_9s-8.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGGHHBGX2_n01_9s-8.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9122257
Sequences flagged as poor quality	0
Sequence length	75
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTAGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	70610	0.7740408979926788	RNA PCR Primer, Index 24 (100% over 43bp)
CTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGTAAGGCGCAAGGAAGCTGATTGGCGGGATCCCTCGCGGG	11451	0.12552814506322285	No Hit
CACGCTTTCACGGTTCGTATTCGTACTGAAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATT	10458	0.11464268108210501	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTATGAACGAATTCAGACTGTGAAACTG	10211	0.1119350178360465	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	9609	0.10533577381123992	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	8950	62.407207	46
CGTATGC	8985	62.1607	44
ATGCCGT	9230	60.403225	47
GTATGCC	9365	59.787086	45
TCGTATG	9455	59.03394	43
ACGTCTG	11760	58.402584	15
GCACACG	11840	58.154606	11
GGTAGCA	9660	57.814957	34
CACACGT	11975	57.354645	12
AGTCACG	10040	57.311264	28
CTCGTAT	9615	57.010468	42
GTAGCAT	9840	56.23182	35
CACGTCT	12200	56.211124	14
GTCACGG	10195	55.830864	29
GCCGTCT	10215	54.37728	49
AGCACAC	12755	54.226498	10
CATCTCG	10050	53.787395	39
CTGAACT	12920	53.320663	19
TCCAGTC	12795	53.24668	25
ACTCCAG	13045	52.465096	23