HGGHHBGX2_n01_4w-2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGGHHBGX2_n01_4w-2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12016818
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	78056	0.6495563134933058	TruSeq Adapter, Index 18 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCCGC	10240	63.098457	33
TATGCCG	10695	60.4856	48
CCGCACA	10630	59.874294	36
CGCACAT	10625	59.707165	37
TCCGCAC	10760	59.66362	35
CGTATGC	10895	59.339645	46
GTCCGCA	10905	59.06059	34
GTATGCC	11235	57.670544	47
ATGCCGT	11445	56.5549	49
ACGTCCG	11445	56.42492	32
TCGTATG	11580	55.9163	45
GCACACG	14410	55.49084	11
ACGTCTG	14465	55.303013	15
AGTCACG	12055	55.199722	28
CACACGT	14625	54.722485	12
GTCACGT	12050	54.593044	29
CTCGTAT	11885	53.61079	44
ACACGTC	15255	52.48495	13
CACGTCT	15415	51.84981	14
GCCGTCT	12505	51.73638	51