FastQCFastQC Report
Thu 22 Sep 2022
HGG3LDRX2_n02_br174.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGG3LDRX2_n02_br174.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7449668
Sequences flagged as poor quality0
Sequence length151
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATT155210.20834485509958295No Hit
GCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCC148100.19880080561979407No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG143110.19210252054185503No Hit
GTTCAATACATCGGATCGACGCGTAAACGGTACGTCGGCCTGGAGACTAG139190.18684054108183076No Hit
GTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCT106380.1427983099381073No Hit
GTTCAATACATCGGATAGTTCGCGACACCGTTCGTCGGCCTGGAGACTAG102490.13757660072905264No Hit
GGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGC83450.11201841478036337No Hit
GTTCAATACATCGGACGATACGCGTTGGTACGCGTAAGCCTGGAGACTAG78780.10574967904609976No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)