FastQCFastQC Report
Thu 22 Sep 2022
HGG3LDRX2_n02_br163.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGG3LDRX2_n02_br163.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9143697
Sequences flagged as poor quality0
Sequence length151
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATT212910.2328489231434506No Hit
GCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCC205070.2242747107652408No Hit
GTTCAATACATCGGATCGACGCGTAAACGGTACGTCGGCCTGGAGACTAG186910.20441403515448947No Hit
GTTCAATACATCGGATAGTTCGCGACACCGTTCGTCGGCCTGGAGACTAG146020.1596947055441579No Hit
GTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCT133630.14614438776787989No Hit
GGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGC104730.11453791611861154No Hit
GTTCAATACATCGGACGATACGCGTTGGTACGCGTAAGCCTGGAGACTAG99360.10866501809935303No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG93530.10228904129259751No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)