FastQCFastQC Report
Thu 22 Sep 2022
HGG3LDRX2_n02_br135.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGG3LDRX2_n02_br135.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13192159
Sequences flagged as poor quality0
Sequence length151
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCC457810.3470318997822873No Hit
ACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATT432440.327800779235605No Hit
GTTCAATACATCGGATCGACGCGTAAACGGTACGTCGGCCTGGAGACTAG391970.29712346553736957No Hit
GTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCT308640.23395715591359986No Hit
GTTCAATACATCGGATAGTTCGCGACACCGTTCGTCGGCCTGGAGACTAG303180.22981833375416413No Hit
GGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGC234450.1777192042636842No Hit
GTTCAATACATCGGACGATACGCGTTGGTACGCGTAAGCCTGGAGACTAG224050.16983573348380657No Hit
GTTCAATACATCGGACCGTACGTCGTGTCGAACGACGGCCTGGAGACTAG194150.1471707549916583No Hit
GTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAG171530.13002420604542442No Hit
CTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCG164500.12469528300864173No Hit
GTGCTAGAGCTTGCTACGACCAATTGAGCTATTATGCGCGCGATACGCGT155190.11763806060857818No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)