FastQCFastQC Report
Thu 22 Sep 2022
HGG3LDRX2_n01_br165.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGG3LDRX2_n01_br165.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7837754
Sequences flagged as poor quality0
Sequence length151
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCC253180.32302621388729474No Hit
ACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATT237450.30295668886775473No Hit
GTTCAATACATCGGATCGACGCGTAAACGGTACGTCGGCCTGGAGACTAG216220.27586984740781606No Hit
GTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCT167660.21391332261767848No Hit
GTTCAATACATCGGATAGTTCGCGACACCGTTCGTCGGCCTGGAGACTAG164880.2103663881259861No Hit
GGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGC130130.16602970697983122No Hit
GTTCAATACATCGGACGATACGCGTTGGTACGCGTAAGCCTGGAGACTAG128960.16453693239160094No Hit
GTTCAATACATCGGACCGTACGTCGTGTCGAACGACGGCCTGGAGACTAG112540.14358705312772002No Hit
GTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAG91720.11702332071152016No Hit
CTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCG80580.10281006523042188No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)