FastQCFastQC Report
Tue 4 Dec 2018
HGFWJBGX9_n02_MT_4329.TR2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGFWJBGX9_n02_MT_4329.TR2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17667926
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTGTT106950.018.37037145
TGTACGG60950.016.057928145
ACGTCCG101650.013.265846145
TGGGATC127900.011.6812582
AGAGCGG112650.011.198181145
GATCCTG138200.010.6997315
CGGAGTA59650.010.6935454
AACGTAT171450.010.2312196
GAACGTA176300.010.0731034
CTAACCA82550.09.9224628
GGGATCC147700.09.8650553
TTGATCC146600.09.8401793
GAGTACC69850.09.44331556
TGATCCT149250.09.3247334
ACGTATT190200.09.29884056
CGGGAAC186800.09.0554261
GTACGTC587050.09.002889145
GGATCCC143650.08.9313514
CGTATTC200050.08.9136318
GTGTACG670450.08.834563145
Produced by FastQC (version 0.11.5)