FastQCFastQC Report
Tue 4 Dec 2018
HGFWJBGX9_n01_MT_5764.TR2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGFWJBGX9_n01_MT_5764.TR2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16970207
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTT149700.040.874607145
GCGCATG136350.035.093105145
TGCCGTG183400.028.185333145
CGTCTTG148000.026.15848145
TGTCCTA96650.025.2041285
ATGCCGG214600.025.033495145
CGTATGG130350.024.97286145
GCATCTG210950.024.607443145
GATCCTG128000.018.4646845
GTCCTAC133550.018.4030086
TGATCCT124750.017.841534
CTACTCT140450.017.8095159
GTGTCCT144300.016.831114
CGCATCG580750.016.715693145
GCGGTGT176150.016.3819431
CCTACTC161250.015.9160018
TCCTACT157000.015.8850267
CTGGCTC141700.015.1964229
TTGATCC149000.014.8891783
TTTGATC169200.014.7827612
Produced by FastQC (version 0.11.5)