FastQCFastQC Report
Tue 4 Dec 2018
HGFWJBGX9_n01_MT_4329.TR2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGFWJBGX9_n01_MT_4329.TR2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17667926
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAAATG126950.018.617481145
CTAACCA87900.010.7222428
TGGGATC126850.010.516462
GATCCTG135200.09.9741535
TCTCGTT147550.09.679727145
TACGGAC92300.09.6614695
GAGTACC70500.09.3580886
GAACGTA179600.09.32494
CTCGTAT175450.09.29748145
AACGTAT171050.09.24002555
CGGAGTA59800.09.2140584
TGATCCT147150.09.164134
CTCCGCG598650.09.034454145
GTATGCC160100.09.011516145
ACTCCGC602600.08.987266145
CGGGAAT95150.08.9155391
AATCTCG300450.08.783453145
CGCGAAA487800.08.768924145
GCGAAAT452700.08.696118145
AGGGGAT102700.08.6831422
Produced by FastQC (version 0.11.5)