FastQCFastQC Report
Sat 8 Sep 2018
HGFVLBGX7_n02.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGFVLBGX7_n02.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465061979
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC8847967519.025351242484607No Hit
GCAGTAGA8425963218.11793606116315No Hit
CAGTACTG6146923113.217427735583605No Hit
AGTAGTCT5113043110.99432619926128No Hit
GGATGCCG4775875810.269331864688942No Hit
ATGCTGAA313129166.733062992449012No Hit
TATGATTC301540476.483877066200675No Hit
CCCACAGT287253046.1766614552680945No Hit
GGGGGGGG217721294.68155428375709No Hit
ATTACTCG31678380.681164692674221No Hit
TCCGGAGA15120860.3251364481034043No Hit
TTCCCGCC5891170.1266749436853018No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)