FastQCFastQC Report
Tue 17 Aug 2021
HGFHNDRXY_n01_col3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGFHNDRXY_n01_col3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142097062
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3557850.25038167221219537No Hit
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2758280.1941123877705508No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTTCGACATCTCGTA1861710.1310167834434184TruSeq Adapter, Index 8 (97% over 37bp)
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1813150.12759940103476594No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1428690.10054324698141894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)