FastQCFastQC Report
Thu 19 Aug 2021
HGCGHDRXY_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGCGHDRXY_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences995145995
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTTAGT892825558.971804684799038No Hit
TTAAAGCA850252268.543995195398441No Hit
CACGCCTT828690958.327330403414827No Hit
AGGATACA817800608.21789570685053No Hit
GTAGCACA817536518.215241925382013No Hit
TCCAATGC798539548.024345613730777No Hit
AAGCGCTG787499947.913411137227157No Hit
CGTTTGAT766272307.7000993206027015No Hit
TCTCGGGC761549967.652645579908102No Hit
ACCGGCTC721077727.245949073030235No Hit
GTATATAG658816326.620298160371936No Hit
CGTCCTAG622071416.251056760772071No Hit
GGGGGGGG237144972.383016875830365No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)