FastQCFastQC Report
Wed 5 Dec 2018
HGCFKBGX9_n01_C.F1.meWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGCFKBGX9_n01_C.F1.meWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25144516
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACTAA460400.06.0513170
CTAATCG336250.05.953952370
GTCACTA470350.05.87870869
ACTAATC386350.05.7888470
CACTAAT413700.05.609183370
TATGCCG101300.05.424731746
GTATGCC103250.05.356125445
TAATCGA327250.05.30485770
Produced by FastQC (version 0.11.5)