FastQCFastQC Report
Wed 5 Dec 2018
HGCFKBGX9_n01_C.F1.mdWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGCFKBGX9_n01_C.F1.mdWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30056479
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCCAAC321900.06.067198870
CACCCAA359100.05.47763469
TATGCCG81200.05.47427146
CCCAACA323850.05.45786170
GTATGCC85150.05.38469245
AGTCACC448950.05.153217370
GTCACCC383600.05.146067670
Produced by FastQC (version 0.11.5)