FastQCFastQC Report
Wed 5 Dec 2018
HGCFKBGX9_n01_C.F1.fbWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGCFKBGX9_n01_C.F1.fbWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31996889
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTAATG111900.08.19485270
CTGCTTG229500.07.442588366
TGCTTGA237450.07.41465367
TATGCCG254550.07.067171655
AACTAAT748000.06.901767370
TAATCTC480200.06.87320770
GTATGCC262350.06.870503454
CAACTAA824350.06.86968470
CCAACTA919950.06.821595770
GCTTGAA273250.06.763457368
ATGCCGT285750.06.60178856
CTAATCT526900.06.569585370
CGTATGC280050.06.49899953
ACTAATC582400.06.30414369
ACCAACT1078250.06.10899970
AATCTCG472050.06.065061670
TGCCGTC310000.05.98373757
TCACCAA1309000.05.97596170
CACCAAC1176850.05.960003470
TCGTATG301450.05.956413752
Produced by FastQC (version 0.11.5)