FastQCFastQC Report
Wed 5 Dec 2018
HGCFKBGX9_n01_C.F1.faWGA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGCFKBGX9_n01_C.F1.faWGA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39599887
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCTTGAA216050.08.31107668
TCTCGTA433300.08.23918570
ATCTCGT525100.08.05855370
CTCGTAT381350.07.92063270
GATCTCG641950.07.900233770
CTTGAAA233800.07.829446369
AGATCTC696450.07.744358570
AAGATCT833800.07.178058670
TGCTTGA252600.06.90068767
CTGCTTG261800.06.738219766
TCGTATG377000.06.55444870
CCAAAAG1452500.06.36633570
CAAAAGA1376450.06.166291770
GTCTTCT312950.05.726187761
AAAAGAT1410300.05.65100169
CACCAAA1826250.05.630725470
ACCAAAA1732000.05.56328270
GCCGTCT327850.05.540445358
AAAGATC1282450.05.455646569
CCGTCTT333700.05.41201760
Produced by FastQC (version 0.11.5)