FastQCFastQC Report
Wed 28 Nov 2018
HG7FTBGX9_n01_Maizes_8b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FTBGX9_n01_Maizes_8b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12276862
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG15350.041.28071249
TCGTATG14200.040.42526246
CGTATGC16200.038.24519347
ACTTTGT362000.037.3392561
TTTGTGT632250.035.4948962
GTATGCC18250.035.4844548
CTCGTAT14550.034.88179845
TGTGTTT727500.032.7230344
TTGTGTT769250.030.8654163
CTTTGTG730150.030.6686121
ATGCCGT21300.029.75009550
AGTCACA28250.028.11800229
CAGTCAC28750.027.62843128
CCGTCTT21350.027.5496953
TCACAAC30450.026.77632731
CACAACT31100.026.21669232
GTCACAA30650.025.68772130
CTTGTGT49950.024.1662562
GTGTTTG1008350.023.5914275
TGCCGTC27850.023.0048251
Produced by FastQC (version 0.11.5)