HG7FTBGX9_n01_Maizes_2a.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HG7FTBGX9_n01_Maizes_2a.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6309363
Sequences flagged as poor quality	0
Sequence length	76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14781	0.23427087647358377	No Hit
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13322	0.211146513522839	No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGTCTAACATCTCGTA	11785	0.18678589264875076	TruSeq Adapter, Index 13 (97% over 37bp)
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10115	0.16031729352075635	No Hit
CTTTGTGTTTGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGC	8823	0.13983979048281103	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8535	0.13527514584277367	No Hit
GTGTTTGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGC	7470	0.11839547035096887	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	1340	58.77716	47
TCGTATG	1355	58.125114	46
TATGCCG	1390	56.919224	49
CTCGTAT	1355	56.05711	45
GTATGCC	1470	54.058872	48
GTCTAAC	1490	53.548664	36
CGTCTAA	1535	52.206814	35
CTAACAT	1645	47.437878	38
ATGCCGT	1705	46.1984	50
CCGTCTT	1710	45.245842	53
CATCTCG	1680	44.790695	42
CCGTCTA	1805	44.589592	34
GCTTGAA	1885	41.61403	62
ACCGTCT	1995	40.16756	33
TGCCGTC	1985	39.681747	51
TCTCGTA	1890	39.630966	44
CAGTCAC	2050	39.088966	28
AGTCACC	2125	37.874325	29
TGCTTGA	2070	36.878983	61
TCACCGT	2185	36.673855	31