FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n02_ATAC6_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n02_ATAC6_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39532038
Sequences flagged as poor quality0
Sequence length37
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGTAG180250.024.4109733
AGGCCGA215700.024.26174211
TTGGGAG721100.024.1218536
CCGAGTA182800.024.052122
GAATCGC120700.023.81980325
AGTAGCT622950.023.7987045
GGGATTA808550.023.77356112
GTAGCTG619100.023.679216
TTTGGGA578600.023.5733785
GGATTAC775750.023.48339513
CCCGAGT193850.023.4130151
GATTACA792900.023.38518514
AGGCTGA729900.023.36140811
TGGGATT844550.023.26442111
ATCGCTT149700.023.25400427
ACTTTGG540150.023.1210653
CGCTTGA145800.023.0797929
ACTCGGG156750.023.0109374
CGTGAGC184400.022.9877723
ATTACAG804500.022.95551915
Produced by FastQC (version 0.11.5)