FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n02_ATAC2_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n02_ATAC2_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26895632
Sequences flagged as poor quality0
Sequence length37
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGCCGA177100.026.08372511
GAATCGC93950.025.61959525
CGAGTAG144350.025.5644343
CCGAGTA144650.025.39192
TTGGGAG605900.025.1065186
AGTAGCT499150.024.9630075
GTAGCTG495400.024.945776
GGGATTA652650.024.87582612
GGATTAC616900.024.7538513
AATCGCT98400.024.71299726
GATTACA630750.024.68589414
CCCGAGT151000.024.616091
ACTTTGG446350.024.5804563
TTTGGGA488100.024.5658325
AGGCTGA585700.024.54239511
TGGGATT681850.024.44400211
ATTACAG631800.024.4140415
ATCGCTT116850.024.40603327
TACAGGC564200.024.15113317
CGCTTGA114550.024.13953429
Produced by FastQC (version 0.11.5)