FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n02_ATAC10_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n02_ATAC10_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37452797
Sequences flagged as poor quality0
Sequence length37
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAATCGC104450.024.38000125
CGAGTAG156150.024.198553
CCGAGTA156800.024.106162
AGGCCGA179550.023.92375811
TTGGGAG638200.023.8307466
GTAGCTG548950.023.692476
GGATTAC677000.023.6440913
GGGATTA719150.023.63878812
ATCGCTT127700.023.61901527
CCCGAGT165700.023.4323861
AGTAGCT562100.023.4162395
TCGCTTG124900.023.40435228
GATTACA699150.023.39961614
AGGCTGA654850.023.21047811
AATCGCT111750.023.20344526
CGCTTGA124700.023.13143229
TTTGGGA509700.023.1198565
TGGGATT754750.023.09588411
ATTACAG711400.022.94853815
CGTGAGC157900.022.8804923
Produced by FastQC (version 0.11.5)