FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n01_ATAC9_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n01_ATAC9_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55355043
Sequences flagged as poor quality0
Sequence length37
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAATCGC171000.024.80852725
CGAGTAG236500.024.3694673
CCGAGTA240100.024.0432932
ATCGCTT209400.023.84169427
AGGCCGA271400.023.72331611
GGGATTA1100850.023.72019612
GGATTAC1037950.023.68966713
TTGGGAG959750.023.6746086
CGCTTGA206800.023.62424729
CCCGAGT250850.023.5977421
GTAGCTG831650.023.5542686
AGGCTGA1024250.023.52661311
GATTACA1063000.023.51650214
AGTAGCT839300.023.4503525
CGTGAGC241850.023.3086123
AATCGCT186250.023.27660626
TCGCTTG209200.023.26435528
TGGGATT1153500.023.23923111
ATTACAG1076450.023.1145515
TTTGGGA754600.023.0956865
Produced by FastQC (version 0.11.5)