FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n01_ATAC8_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n01_ATAC8_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27173121
Sequences flagged as poor quality0
Sequence length37
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAATCGC79000.024.7013125
CCGAGTA115900.024.048032
CGAGTAG116100.023.9394913
AGGCCGA133050.023.8812511
GTAGCTG383550.023.8650976
CGCTTGA93900.023.76992429
ATCGCTT96600.023.76302127
TTGGGAG452850.023.725036
GGATTAC490250.023.6264213
GGGATTA526650.023.544412
CCCGAGT121450.023.5272661
GATTACA502000.023.42873814
AGTAGCT391600.023.4180095
CGTGAGC115300.023.37689223
TCGCTTG95900.023.20899628
AGGCTGA477800.023.10005211
ATTACAG507000.023.06300215
TGGGATT550500.023.0564111
TACAGGC457700.022.87846217
TTACAGG489650.022.83235516
Produced by FastQC (version 0.11.5)