FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n01_ATAC7_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n01_ATAC7_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25296131
Sequences flagged as poor quality0
Sequence length37
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGTAG110800.024.7770483
GAATCGC74500.024.52897325
CCGAGTA112850.024.3686472
CCCGAGT116600.024.041981
ATCGCTT91700.023.98511327
AGGCCGA123100.023.96058511
GTAGCTG375150.023.8875856
TTGGGAG429500.023.7268876
AGGCTGA460150.023.71655511
GGATTAC479050.023.68688613
TCGCTTG90500.023.6522328
GGGATTA507900.023.62612712
CGCTTGA90600.023.57489429
AGTAGCT384300.023.5689225
CGTGAGC106100.023.4609723
GATTACA490050.023.45264214
AATCGCT81450.023.06416126
TGGGATT532200.023.0191211
TTTGGGA342900.022.9652125
ATTACAG493450.022.96105215
Produced by FastQC (version 0.11.5)