FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n01_ATAC6_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n01_ATAC6_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39532038
Sequences flagged as poor quality0
Sequence length37
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAATCGC131750.024.7289825
TTGGGAG738700.024.1932286
CGAGTAG179700.024.1708813
AGGCCGA219850.024.13955111
CCGAGTA180100.024.1345982
GGGATTA826100.024.08558712
GTAGCTG624250.023.9330846
GGATTAC782850.023.92721713
AGTAGCT627850.023.8871735
GATTACA800900.023.68606214
AATCGCT138850.023.67666626
ATCGCTT158400.023.67047527
AGGCTGA773850.023.63253811
TGGGATT868050.023.60703711
CCCGAGT189500.023.5548111
CGCTTGA152200.023.5348329
CGTGAGC188000.023.49639723
TTTGGGA589650.023.4630035
ATTACAG809350.023.25836815
TCGCTTG155650.023.22238528
Produced by FastQC (version 0.11.5)