FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n01_ATAC4_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n01_ATAC4_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29325922
Sequences flagged as poor quality0
Sequence length37
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGTAG149000.025.4683063
CCGAGTA150000.025.1437172
GAATCGC97450.025.1142625
AGGCCGA164800.024.95178611
CCCGAGT154400.024.8829291
GTAGCTG506400.024.877776
TTGGGAG571850.024.7899976
AGTAGCT513050.024.7667735
GGGATTA663150.024.67703412
GGATTAC626800.024.57987813
GATTACA643650.024.3845214
TGGGATT688850.024.34580811
AGGCTGA587900.024.315911
TTTGGGA453800.024.198495
ATTACAG645000.024.1242915
TACAGGC582500.024.09404417
CGTGAGC143700.024.06323823
AATCGCT104000.023.83073626
CGCTTGA116750.023.83044229
ATCGCTT119700.023.82559627
Produced by FastQC (version 0.11.5)