FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n01_ATAC12_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n01_ATAC12_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25769913
Sequences flagged as poor quality0
Sequence length37
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGTAG117550.024.949513
CCGAGTA119550.024.766092
GAATCGC85050.024.09222225
GGATTAC505450.024.07543213
AGTAGCT413350.023.9895425
GGGATTA539150.023.96776412
AATCGCT87450.023.83877226
GTAGCTG414350.023.8306376
GATTACA518100.023.78994614
CCCGAGT129000.023.5442981
AGGCCGA135850.023.52626211
AGAATCG89950.023.50333624
ATTACAG524650.023.42789615
TTGGGAG467100.023.4126556
GAGTAGC268850.023.403014
TGGGATT568600.023.3395411
TACAGGC475600.023.29516617
AGGCTGA495300.023.2448911
TTACAGG507300.023.1963416
ATCGCTT101400.023.06602127
Produced by FastQC (version 0.11.5)