FastQCFastQC Report
Thu 22 Nov 2018
HG7FNBGX9_n01_ATAC10_11-14-18.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7FNBGX9_n01_ATAC10_11-14-18.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37452797
Sequences flagged as poor quality0
Sequence length37
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAATCGC115200.024.76990725
CGAGTAG164500.024.5755373
CCGAGTA167050.024.2656422
AGGCCGA180700.024.04283511
ATCGCTT138150.023.9874427
AATCGCT121950.023.81849526
CGCTTGA136200.023.77346629
GGGATTA750350.023.5282312
TCGCTTG137400.023.50924728
GGATTAC700900.023.49639113
TTGGGAG643700.023.4934776
CCCGAGT176350.023.4380461
GTAGCTG555050.023.4085526
AGGCTGA678650.023.318511
AGTAGCT561950.023.253475
CGTGAGC162300.023.2348123
GATTACA723600.023.20067414
TGGGATT785150.023.08112111
AGAATCG128000.022.84975424
ATTACAG732400.022.82854815
Produced by FastQC (version 0.11.5)