FastQCFastQC Report
Fri 28 Oct 2016
HG7CVAFXX_n01_mini02_46.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG7CVAFXX_n01_mini02_46.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences892521
Sequences flagged as poor quality0
Sequence length75
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGCGC902.1260587E-422.99964519
CTAATAC3200.021.5645853
GATCTCG3900.020.3458438
CGCACCT1901.5976184E-819.97337566
TATTAGG3050.019.2313652
AGGCGCG1108.235606E-418.81789218
GTATATA6350.018.4742261
TATGCCG5050.018.4452645
GCGCGCA950.00783381118.15761420
CCTAATA3250.018.0478972
TGCCGTC5100.017.58796347
ATGCCGT5300.017.57520146
CCGCACC2208.566167E-817.24973565
CCCTAGG1250.001938901516.56161
TTACACG1250.001938901516.56164
CTCGTAT5100.016.23504341
GCCGTCT5750.016.1997548
ACCTAAT3651.8189894E-1216.0700451
ATCTCGT4950.016.03005639
TAATACT6050.015.9684854
Produced by FastQC (version 0.11.2)