FastQCFastQC Report
Thu 6 Dec 2018
HG77GBGX9_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG77GBGX9_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455167733
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATGC7642881616.791351947612686No Hit
TCGGCG6567318814.428348768738402No Hit
ATGCTG5929173713.02634890421813No Hit
TATGAT5354933811.76474827138065No Hit
CCCACA5298779711.64137814663589No Hit
AACCGT435682239.571905001447016No Hit
GGTTTA409366808.993757033300072No Hit
CTAAAC377135858.285645546847233No Hit
GGGGGG155360013.4132474412460168No Hit
CCACAG9964190.21891248604830252No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)