MultiQC Report

Toolbox

MultiQC Toolbox

Highlight Samples

This report has flat image plots that won't be highlighted.
See the documentation for help.

Regex mode off

Rename Samples

This report has flat image plots that won't be renamed.
See the documentation for help.

Click here for bulk input.

Paste two columns of a tab-delimited table here (eg. from Excel).

First column should be the old name, second column the new name.

Regex mode off

Show / Hide Samples

This report has flat image plots that won't be hidden.
See the documentation for help.

Regex mode off

Aspect ratio

Plot scaling

Download the raw data used to create the plots in this report below:

Format:

Note that additional data was saved in multiqc_data when this report was generated.

Choose Plots

If you use plots from MultiQC in a publication or presentation, please cite:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

Save Settings

You can save the toolbox settings for this report to the browser.

Load Settings

Choose a saved report profile from the dropdown box below:

About MultiQC

This report was generated using MultiQC, version 1.0.dev0

You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

Loading report..

Report generated on 2018-05-15, 00:05 based on data in: /mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/HG5M3BCX2/2

General Statistics

Showing ¹⁶⁶/₁₆₆ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
HG5M3BCX2_l02n01_r2zt14s3.351000000d4d73	0.0%	62%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r2zt14s67.351000000d4ded	0.0%	52%	101 bp	36%	0.0
HG5M3BCX2_l02n01_r3zt14s1.351000000d7b01	74.1%	48%	101 bp	42%	14.3
HG5M3BCX2_l02n01_r3zt14s10.351000000d7c1d	11.8%	48%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s11.351000000d7c2a	12.8%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s12.351000000d7c44	0.0%	49%	101 bp	36%	0.0
HG5M3BCX2_l02n01_r3zt14s13.351000000d7c6d	72.0%	49%	101 bp	33%	12.5
HG5M3BCX2_l02n01_r3zt14s14.351000000d7c87	67.7%	49%	101 bp	42%	7.5
HG5M3BCX2_l02n01_r3zt14s16.351000000d7cd7	0.0%	45%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s17.351000000d7ce4	5.0%	50%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s18.351000000d7d1c	8.8%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s19.351000000d7d29	9.2%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s2.351000000d7b1e	72.8%	48%	101 bp	33%	11.8
HG5M3BCX2_l02n01_r3zt14s21.351000000d7d6c	5.3%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s22.351000000d7d86	74.8%	49%	101 bp	42%	8.3
HG5M3BCX2_l02n01_r3zt14s24.351000000d7dbc	0.0%	46%	101 bp	36%	0.0
HG5M3BCX2_l02n01_r3zt14s25.351000000d7dd6	8.7%	50%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s26.351000000d7de3	8.9%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s27.351000000d7e0e	10.6%	49%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s28.351000000d7e28	0.0%	48%	101 bp	55%	0.0
HG5M3BCX2_l02n01_r3zt14s29.351000000d7e42	8.1%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s3.351000000d7b2b	16.9%	49%	101 bp	50%	0.0
HG5M3BCX2_l02n01_r3zt14s30.351000000d7e6b	75.7%	48%	101 bp	50%	11.6
HG5M3BCX2_l02n01_r3zt14s32.351000000d7eaf	0.0%	46%	101 bp	36%	0.0
HG5M3BCX2_l02n01_r3zt14s33.351000000d7ebb	0.0%	51%	101 bp	50%	0.0
HG5M3BCX2_l02n01_r3zt14s34.351000000d7ec8	6.8%	48%	101 bp	58%	0.0
HG5M3BCX2_l02n01_r3zt14s35.351000000d7ee2	4.8%	49%	101 bp	58%	0.0
HG5M3BCX2_l02n01_r3zt14s37.351000000d7f1a	1.7%	50%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s38.351000000d7f41	1.9%	51%	101 bp	25%	0.0
HG5M3BCX2_l02n01_r3zt14s39.351000000d7f77	0.0%	45%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r3zt14s4.351000000d7b45	0.0%	53%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r3zt14s40.351000000d7f91	0.0%	41%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r3zt14s41.351000000d7fba	5.0%	51%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s42.351000000d7fe1	9.3%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s43.351000000d8009	9.0%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s45.351000000d805a	4.4%	49%	101 bp	25%	0.0
HG5M3BCX2_l02n01_r3zt14s46.351000000d8073	77.6%	49%	101 bp	33%	7.9
HG5M3BCX2_l02n01_r3zt14s47.351000000d80aa	0.0%	44%	101 bp	55%	0.0
HG5M3BCX2_l02n01_r3zt14s48.351000000d80b6	0.0%	41%	101 bp	36%	0.0
HG5M3BCX2_l02n01_r3zt14s49.351000000d80d0	0.0%	55%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r3zt14s5.351000000d7b6e	75.1%	49%	101 bp	33%	9.6
HG5M3BCX2_l02n01_r3zt14s50.351000000d80fa	0.0%	49%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s51.351000000d8108	0.0%	50%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s52.351000000d8122	0.0%	52%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r3zt14s53.351000000d813f	0.0%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s54.351000000d814c	7.0%	50%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s57.351000000d81b5	6.2%	50%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s58.351000000d81df	10.3%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s59.351000000d81ec	80.0%	49%	101 bp	33%	15.3
HG5M3BCX2_l02n01_r3zt14s6.351000000d7b95	73.7%	49%	101 bp	33%	11.2
HG5M3BCX2_l02n01_r3zt14s60.351000000d8214	0.0%	55%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r3zt14s61.351000000d823e	5.7%	49%	101 bp	25%	0.0
HG5M3BCX2_l02n01_r3zt14s62.351000000d8258	9.8%	50%	101 bp	17%	0.0
HG5M3BCX2_l02n01_r3zt14s64.351000000d829b	0.0%	45%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s65.351000000d82b4	10.0%	50%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s66.351000000d82de	79.7%	48%	101 bp	42%	10.7
HG5M3BCX2_l02n01_r3zt14s67.351000000d8306	14.5%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s68.351000000d8320	0.0%	37%	101 bp	36%	0.0
HG5M3BCX2_l02n01_r3zt14s69.351000000d834a	70.8%	47%	101 bp	33%	8.4
HG5M3BCX2_l02n01_r3zt14s7.351000000d7bbe	0.0%	45%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s70.351000000d8363	78.1%	51%	101 bp	33%	12.7
HG5M3BCX2_l02n01_r3zt14s71.351000000d839a	0.0%	54%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r3zt14s72.351000000d83b3	0.0%	48%	101 bp	25%	0.0
HG5M3BCX2_l02n01_r3zt14s73.351000000d83dd	1.6%	51%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s74.351000000d8405	3.9%	49%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s75.351000000d8412	4.3%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s77.351000000d847f	2.9%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s78.351000000d84a6	5.3%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s8.351000000d7bd8	0.0%	48%	101 bp	25%	0.0
HG5M3BCX2_l02n01_r3zt14s80.351000000d84e9	0.0%	44%	101 bp	36%	0.0
HG5M3BCX2_l02n01_r3zt14s82.351000000d852e	0.0%	51%	101 bp	55%	0.0
HG5M3BCX2_l02n01_r3zt14s83.351000000d8548	0.0%	41%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r3zt14s85.351000000d8598	0.0%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s86.351000000d85ce	0.0%	46%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s89.351000000d863a	7.7%	50%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s9.351000000d7bf2	9.7%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s90.351000000d8654	10.2%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n01_r3zt14s91.351000000d8660	9.0%	48%	101 bp	50%	0.0
HG5M3BCX2_l02n01_r3zt14s92.351000000d868a	0.0%	45%	101 bp	45%	0.0
HG5M3BCX2_l02n01_r3zt14s93.351000000d8697	7.3%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n01_r3zt14s94.351000000d86cd	80.9%	49%	101 bp	42%	12.5
HG5M3BCX2_l02n01_r3zt14s95.351000000d86e7	0.0%	66%	101 bp	36%	0.0
HG5M3BCX2_l02n01_r3zt14s96.351000000d8702	0.0%	51%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r2zt14s3.352000000d4d70	0.0%	62%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r2zt14s67.352000000d4dea	0.0%	56%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r3zt14s1.352000000d7b0e	71.1%	48%	101 bp	42%	14.3
HG5M3BCX2_l02n02_r3zt14s10.352000000d7c1a	2.8%	49%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s11.352000000d7c27	0.3%	51%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s12.352000000d7c41	0.0%	55%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r3zt14s13.352000000d7c6a	69.4%	49%	101 bp	33%	12.5
HG5M3BCX2_l02n02_r3zt14s14.352000000d7c84	65.4%	49%	101 bp	42%	7.5
HG5M3BCX2_l02n02_r3zt14s16.352000000d7cd4	0.0%	45%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s17.352000000d7ce1	0.3%	51%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s18.352000000d7d19	0.5%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s19.352000000d7d26	0.0%	50%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s2.352000000d7b1b	68.1%	48%	101 bp	33%	11.8
HG5M3BCX2_l02n02_r3zt14s21.352000000d7d69	0.1%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s22.352000000d7d83	69.4%	49%	101 bp	42%	8.3
HG5M3BCX2_l02n02_r3zt14s24.352000000d7db9	0.0%	44%	101 bp	36%	0.0
HG5M3BCX2_l02n02_r3zt14s25.352000000d7dd3	1.2%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s26.352000000d7de0	1.1%	47%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s27.352000000d7e0b	0.0%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s28.352000000d7e25	0.0%	45%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r3zt14s29.352000000d7e4f	0.6%	49%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s3.352000000d7b28	0.3%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s30.352000000d7e68	72.2%	48%	101 bp	50%	11.6
HG5M3BCX2_l02n02_r3zt14s32.352000000d7eac	0.0%	44%	101 bp	36%	0.0
HG5M3BCX2_l02n02_r3zt14s33.352000000d7eb8	0.0%	54%	101 bp	50%	0.0
HG5M3BCX2_l02n02_r3zt14s34.352000000d7ec5	0.0%	50%	101 bp	67%	0.0
HG5M3BCX2_l02n02_r3zt14s35.352000000d7eef	0.0%	53%	101 bp	58%	0.0
HG5M3BCX2_l02n02_r3zt14s37.352000000d7f17	0.0%	53%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s38.352000000d7f4e	0.2%	53%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s39.352000000d7f74	0.0%	42%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r3zt14s4.352000000d7b42	0.0%	52%	101 bp	36%	0.0
HG5M3BCX2_l02n02_r3zt14s40.352000000d7f9e	0.0%	39%	101 bp	36%	0.0
HG5M3BCX2_l02n02_r3zt14s41.352000000d7fb7	0.1%	50%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s42.352000000d7fee	1.3%	49%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s43.352000000d8006	0.1%	50%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s45.352000000d8057	0.2%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s46.352000000d8070	71.3%	49%	101 bp	33%	7.9
HG5M3BCX2_l02n02_r3zt14s47.352000000d80a7	0.0%	42%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r3zt14s48.352000000d80b3	0.0%	43%	101 bp	36%	0.0
HG5M3BCX2_l02n02_r3zt14s49.352000000d80dd	0.0%	51%	101 bp	55%	0.0
HG5M3BCX2_l02n02_r3zt14s5.352000000d7b6b	72.7%	49%	101 bp	33%	9.6
HG5M3BCX2_l02n02_r3zt14s50.352000000d80f7	0.0%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s51.352000000d8105	0.0%	52%	101 bp	58%	0.0
HG5M3BCX2_l02n02_r3zt14s52.352000000d812f	0.0%	49%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r3zt14s53.352000000d813c	0.0%	52%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s54.352000000d8149	0.0%	52%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s57.352000000d81b2	0.5%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s58.352000000d81dc	0.5%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s59.352000000d81e9	76.2%	49%	101 bp	33%	15.3
HG5M3BCX2_l02n02_r3zt14s6.352000000d7b92	70.1%	49%	101 bp	33%	11.2
HG5M3BCX2_l02n02_r3zt14s60.352000000d8211	0.0%	58%	101 bp	36%	0.0
HG5M3BCX2_l02n02_r3zt14s61.352000000d823b	2.5%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s62.352000000d8255	1.5%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s64.352000000d8298	0.0%	43%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s65.352000000d82b1	1.4%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s66.352000000d82db	73.8%	48%	101 bp	42%	10.7
HG5M3BCX2_l02n02_r3zt14s67.352000000d8303	0.7%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s68.352000000d832d	0.0%	36%	101 bp	27%	0.0
HG5M3BCX2_l02n02_r3zt14s69.352000000d8347	68.2%	47%	101 bp	33%	8.4
HG5M3BCX2_l02n02_r3zt14s7.352000000d7bbb	0.0%	48%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s70.352000000d8360	75.3%	51%	101 bp	33%	12.7
HG5M3BCX2_l02n02_r3zt14s71.352000000d8397	0.0%	48%	101 bp	36%	0.0
HG5M3BCX2_l02n02_r3zt14s72.352000000d83b0	0.0%	48%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s73.352000000d83da	0.0%	52%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s74.352000000d8402	0.9%	50%	101 bp	50%	0.0
HG5M3BCX2_l02n02_r3zt14s75.352000000d841f	0.0%	53%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s77.352000000d847c	0.0%	53%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s78.352000000d84a3	0.2%	52%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s8.352000000d7bd5	0.0%	48%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s80.352000000d84e6	0.0%	44%	101 bp	36%	0.0
HG5M3BCX2_l02n02_r3zt14s82.352000000d852b	0.0%	50%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r3zt14s83.352000000d8545	0.0%	46%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r3zt14s85.352000000d8595	0.0%	49%	101 bp	50%	0.0
HG5M3BCX2_l02n02_r3zt14s86.352000000d85cb	0.0%	52%	101 bp	42%	0.0
HG5M3BCX2_l02n02_r3zt14s89.352000000d8637	1.0%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s9.352000000d7bff	3.1%	49%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s90.352000000d8651	0.6%	48%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s91.352000000d866d	0.2%	50%	101 bp	33%	0.0
HG5M3BCX2_l02n02_r3zt14s92.352000000d8687	0.0%	44%	101 bp	45%	0.0
HG5M3BCX2_l02n02_r3zt14s93.352000000d8694	0.6%	50%	101 bp	25%	0.0
HG5M3BCX2_l02n02_r3zt14s94.352000000d86ca	76.0%	49%	101 bp	42%	12.5
HG5M3BCX2_l02n02_r3zt14s95.352000000d86e4	0.0%	60%	101 bp	36%	0.0
HG5M3BCX2_l02n02_r3zt14s96.352000000d870f	9.5%	50%	101 bp	33%	0.0

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Lane Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Lane	Total # of Single-End Reads	Total # PF Reads	Undetermined	% PhiX Aligned
2.0	166147189	159076739	3.0	0.9

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	Undetermined	Undetermined	`Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

Lane 2 Demultiplexing Report

Lane 2 Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.
Perfect: The percentage of reads in this library which have a barcode perfectly matching the barcode specified in TuboWeb. The remainder of reads have mismatches upto the max number of mismatches specified in TuboWeb (Allowed barcode mismatch option in your Library Pool).

Showing ⁹⁶/₉₆ rows and ³/₃ columns.

Library	Total Read Count	Portion (%)	Perfect (%)
r3zt14s44	0.0	0.0	0.0
r3zt14s70	12689230	8.2	98.1
r3zt14s27	1314	0.0	39.0
r3zt14s92	3.0	0.0	100.0
r3zt14s55	0.0	0.0	0.0
r3zt14s37	174.0	0.0	3.5
r3zt14s95	1.0	0.0	100.0
r3zt14s77	416.0	0.0	5.5
r3zt14s20	0.0	0.0	0.0
r3zt14s19	762.0	0.0	36.1
r3zt14s46	7942110	5.1	98.1
r3zt14s57	1273	0.0	42.0
r3zt14s56	0.0	0.0	0.0
r3zt14s1	14279636	9.3	97.9
r3zt14s3	5375	0.0	41.0
r3zt14s76	0.0	0.0	0.0
r3zt14s91	1257	0.0	37.8
r3zt14s31	0.0	0.0	0.0
r3zt14s6	11191490	7.3	98.1
r3zt14s96	21.0	0.0	0.0
r3zt14s54	143.0	0.0	1.4
r3zt14s12	3.0	0.0	0.0
r3zt14s9	1989	0.0	50.6
r3zt14s33	72.0	0.0	12.5
r3zt14s80	4.0	0.0	0.0
r3zt14s21	1244	0.0	42.8
r3zt14s50	14.0	0.0	0.0
r3zt14s75	186.0	0.0	10.2
r3zt14s32	5.0	0.0	0.0
r3zt14s17	624.0	0.0	40.1
r3zt14s87	0.0	0.0	0.0
r3zt14s51	26.0	0.0	3.9
r3zt14s26	1109	0.0	45.4
r3zt14s43	911.0	0.0	38.5
r3zt14s88	0.0	0.0	0.0
r3zt14s59	15268739	9.9	94.8
r3zt14s8	203.0	0.0	0.0
r3zt14s23	0.0	0.0	0.0
r3zt14s69	8399104	5.4	98.1
r3zt14s71	1.0	0.0	100.0
r3zt14s58	1323	0.0	40.4
r3zt14s36	0.0	0.0	0.0
r3zt14s90	1030	0.0	45.1
r3zt14s40	2.0	0.0	0.0
r3zt14s14	7523421	4.9	98.0
r3zt14s64	12.0	0.0	0.0
r3zt14s52	6.0	0.0	100.0
r3zt14s2	11830011	7.7	98.0
r3zt14s48	7.0	0.0	0.0
r3zt14s89	933.0	0.0	42.1
r3zt14s81	0.0	0.0	0.0
r3zt14s78	1312	0.0	8.4
r3zt14s22	8272152	5.4	98.1
r3zt14s39	1.0	0.0	100.0
r3zt14s13	12490683	8.1	97.9
r3zt14s65	2882	0.0	44.0
r3zt14s47	3.0	0.0	100.0
r3zt14s25	950.0	0.0	42.0
r3zt14s74	231.0	0.0	9.1
r3zt14s16	16.0	0.0	0.0
r3zt14s86	18.0	0.0	11.1
r3zt14s66	10739604	7.0	97.8
r3zt14s53	29.0	0.0	3.5
r3zt14s5	9626627	6.2	98.2
r3zt14s15	0.0	0.0	0.0
r3zt14s30	11577426	7.5	98.0
r3zt14s35	83.0	0.0	3.6
r3zt14s38	526.0	0.0	6.8
r3zt14s60	1.0	0.0	100.0
r3zt14s68	2.0	0.0	0.0
r3zt14s49	9.0	0.0	0.0
r3zt14s10	2223	0.0	52.0
r3zt14s73	190.0	0.0	6.8
r3zt14s41	733.0	0.0	43.9
r3zt14s94	12459737	8.1	98.1
r3zt14s18	648.0	0.0	43.4
r3zt14s84	0.0	0.0	0.0
r3zt14s7	19.0	0.0	0.0
r3zt14s72	184.0	0.0	0.0
r3zt14s61	4741	0.0	20.3
r3zt14s85	13.0	0.0	38.5
r3zt14s28	1.0	0.0	100.0
r3zt14s42	749.0	0.0	45.4
r3zt14s67	4167	0.0	37.3
r3zt14s93	2013	0.0	44.2
r3zt14s63	0.0	0.0	0.0
r3zt14s4	5.0	0.0	60.0
r3zt14s82	2.0	0.0	100.0
r3zt14s79	0.0	0.0	0.0
r3zt14s62	11309	0.0	31.3
r3zt14s29	2161	0.0	45.0
r3zt14s11	2493	0.0	42.4
r3zt14s24	7.0	0.0	0.0
r3zt14s83	3.0	0.0	33.3
r3zt14s45	1366	0.0	41.3
r3zt14s34	73.0	0.0	12.3

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Column	Description	ID	Scale
\|\|	Total Read Count	Total Read Count	`Total Read Count`	None
\|\|	Portion (%)	Portion (%)	`Portion (%)`	None
\|\|	Perfect (%)	Perfect (%)	`Perfect (%)`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (101bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Toggle navigation v1.0.dev0

MultiQC Toolbox

Apply Highlight Samples

Apply Rename Samples

Apply Show / Hide Samples

Export Plots

Choose Plots

Save Settings

Load Settings

About MultiQC

General Statistics

General Statistics: Columns

Lane Statistics

Table Nugh: Columns

Lane 2 Demultiplexing Report

Table Zgsy: Columns

FastQC

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

rollover for sample name

Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

v1.0.dev0

Highlight Samples

Rename Samples

Show / Hide Samples