HG5M3BCX2_l02n01_r3zt14s70.351000000d8363.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HG5M3BCX2_l02n01_r3zt14s70.351000000d8363.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12689230
Sequences flagged as poor quality	0
Sequence length	101
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGA	36241	0.2856044062563292	No Hit
CTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCT	30845	0.2430801553758581	No Hit
CTTATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGT	28878	0.22757882077951144	No Hit
GTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAT	24283	0.19136700966094872	No Hit
GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA	24238	0.19101237821365047	No Hit
TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT	23109	0.18211506923587956	No Hit
ATACACATCTCCGAGCCCACGAGACCCTAAGACATCTCGTATGCCGTCTT	15593	0.12288373683824785	RNA PCR Primer, Index 41 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGATCTT	27190	37.593952	5
GATCTTT	17940	36.19354	6
CCGATCT	110490	35.11809	4
TTCCGAT	112085	34.834614	2
TCCGATC	113940	34.17564	3
CGATCTG	43115	33.953865	5
CTTCCGA	124070	31.654917	1
ATCTTTT	18895	31.624014	7
GATCTGG	15580	31.157913	6
CGATCTA	20620	30.17641	5
TCTTTTT	23950	24.810472	8
CGATCTC	31965	24.459076	5
GATCTGA	13345	23.598255	6
GATCTAG	8010	23.48268	6
CTTTTTT	25330	23.440025	9
GATCTCA	8960	22.47723	6
GATCTTG	8140	22.115652	6
ATCTGGC	8475	21.857883	7
ATCTGGG	8020	21.794989	7
GATCTCG	10910	21.028452	6