FastQCFastQC Report
Thu 14 Jul 2022
HG57LDRX2_n02_br52a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG57LDRX2_n02_br52a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12033143
Sequences flagged as poor quality0
Sequence length151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCAATACATCGGAACGCGAATCGTCGACGCGTATAGCCTGGAGACTAG574510.47743968471080245No Hit
GTTCAATACATCGGACGCGATATCACTCGACGCGATAGCCTGGAGACTAG552600.4592316404783023No Hit
ACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATT527760.4385886546848151No Hit
GCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCC423140.3516454512341456No Hit
CTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCG415190.3450386985345391No Hit
GTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCT288360.23963813942874276No Hit
CGTATAGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGG235300.19554325914684137No Hit
GTGCTAGAGCTTGCTACGACCAATTGAGCTATTATGCGCGCGATACGCGT209590.17417727022773682No Hit
GGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG192540.1600080710417885No Hit
GTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAG185600.1542406667983585No Hit
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC172630.14346210296013268No Hit
GAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTT167340.1390659115411493No Hit
GGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGC162840.13532624020174944No Hit
GTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTA161990.13461985783764058No Hit
GTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATC128320.10663880583817545No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)