FastQCFastQC Report
Sun 19 Jun 2022
HG57LDRX2_n02_br47.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG57LDRX2_n02_br47.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21691525
Sequences flagged as poor quality0
Sequence length151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCAATACATCGGAACGCGAATCGTCGACGCGTATAGCCTGGAGACTAG1034840.47707111417938575No Hit
GTTCAATACATCGGACGCGATATCACTCGACGCGATAGCCTGGAGACTAG995390.45888428775754586No Hit
ACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATT908140.41866120524029543No Hit
CTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCG689710.3179628910369372No Hit
GCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCC662010.305192926730601No Hit
GTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCT480390.22146437375887587No Hit
CGTATAGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGG401240.1849754685297599No Hit
GTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAG326380.15046429423472993No Hit
GTGCTAGAGCTTGCTACGACCAATTGAGCTATTATGCGCGCGATACGCGT302210.1393216936107535No Hit
GTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTA286330.13200086208784306No Hit
GGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGC281630.12983411724164162No Hit
GAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTT263680.12155899596731903No Hit
GTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATC220790.1017862967218764No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)