FastQCFastQC Report
Sun 19 Jun 2022
HG57LDRX2_n01_br52.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG57LDRX2_n01_br52.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12033143
Sequences flagged as poor quality0
Sequence length151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCAATACATCGGAACGCGAATCGTCGACGCGTATAGCCTGGAGACTAG547480.4549767255321407No Hit
ACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATT519780.43195697084294604No Hit
GTTCAATACATCGGACGCGATATCACTCGACGCGATAGCCTGGAGACTAG503500.4184276709750728No Hit
GCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCC442580.36780083142035297No Hit
CTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCG429320.3567812665402547No Hit
GTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCT283430.23554112171691138No Hit
GTGCTAGAGCTTGCTACGACCAATTGAGCTATTATGCGCGCGATACGCGT223370.18562897490705463No Hit
CGTATAGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGG217070.1803934350318948No Hit
GTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAG190450.15827120146415613No Hit
GGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGACCCTATACGC189930.1578390616649366No Hit
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACC187840.1561021920873042No Hit
GAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTT156570.13011563146885233No Hit
GTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTA156350.12993280309225944No Hit
GGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG151230.12567788814609782No Hit
GTTCATCGCTTATGTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATC132200.10986323357081355No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)