FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_pIXHALO_col_b-2d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_pIXHALO_col_b-2d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2896455
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCGGA1550.007378228513.54831726
TCTCGGG3901.549779E-913.4614770
AGAGCGG11250.013.37770870
AGCGCGG2150.004779644311.3952970
AGGCGTA7150.011.25868353
CCCGATC12700.011.02356442
CCTTGTT27100.010.97780370
CGGTGGG4207.886156E-710.83327770
AAACCGC26550.010.67791133
ACCGCAA24100.010.60160535
AACCGCA26500.010.56598334
GCGTCGG6704.3655746E-1110.44770770
GCCTAAG20850.010.40761955
GTATCCT16300.010.09197266
TAAACCG29700.09.89893932
AAGGCGT8151.8189894E-129.8772552
CCTAAGT21850.09.61093456
CAACCCG11300.09.6017239
CGCAACC20800.09.59129637
GGCGTAA9550.09.52874654
Produced by FastQC (version 0.11.5)