FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_pIXHALO_col_b-2b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_pIXHALO_col_b-2b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2896455
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCCGGA1550.007378228513.54831726
AGAGCGG11200.013.4374370
TCTCGGG3951.875378E-913.29107170
AGGCGTA7200.011.18049853
AGCGCGG2200.005672769611.13630670
CCCGATC13000.011.038403542
CCTTGTT27050.010.86870570
ACCGCAA24350.010.63649635
AAACCGC26850.010.55860533
AACCGCA26900.010.53897934
CGGTGGG4351.238659E-610.45971570
GCGTCGG6856.548362E-1110.218924570
CAACCCG11450.010.08728439
GCCTAAG21100.09.95255555
GTATCCT16550.09.93952666
AAGGCGT8151.8189894E-129.8772552
TAAACCG29900.09.83272532
CGCAACC21300.09.53046737
ACCCGAT12650.09.40706641
GGCGTAA9700.09.38139454
Produced by FastQC (version 0.11.5)