FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_c24dna_daplib_dapv1-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_c24dna_daplib_dapv1-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCTTCTTCTTGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCCATAT18.333333333333332No Hit
AATTTTATTTAGTTATTCAGTTGATTCGTTATTGGACCAGAGAGCAACAA18.333333333333332No Hit
CAAGGGAGACGCCGATCTGTGGAAACACCTCATCTACTAGCATTAGATCG18.333333333333332No Hit
TGAGAAGCCAGAAGAAGGTTGGTTGGTGTTTTGGAGTCGAATATGACTTG18.333333333333332No Hit
GGCTGAGGTCTCGGTCGTAAACGGAAAAAACCAGACAAATAGCTCCACCA18.333333333333332No Hit
TATCCTTGTTAAAAGACACAAAGCAATACTCATATGGACTTTGGCTACAG18.333333333333332No Hit
TATTTTTATTTTTTGCAATTTGAGAATACATCAGAATGATGTAAGGAATC18.333333333333332No Hit
AGGCAAAGCAGGGGAGAGATTTGCGGTTAGAAACTCTCTAGCTCAAGCTG18.333333333333332No Hit
AGCTTCTTATGGTTTTTCTCTCAGTCTCTCTTTATCACTCATCTCTACTT18.333333333333332No Hit
ATCATCCACATGACATCAAGTCATATTCGACTCCAAAACACTAGATCGGA18.333333333333332No Hit
TCAGGATGCGGTTTAAGTTCTTATACTCAATCATACACATGCCACCAAGT18.333333333333332No Hit
CGCCTTTAAGCTCCGTTTGCAGTTTAAGTTCGTATACTCCATCATACACA18.333333333333332No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)