FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_WOX11_col_b-2d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_WOX11_col_b-2d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3267284
Sequences flagged as poor quality0
Sequence length76
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG1358.09996E-925.92612570
CGCGGAG950.00721305718.42119461
CGCGTCG2408.176241E-411.66675770
AGAGCGG3156.961951E-410.00007670
TGTAGGG34050.06.270238470
GTAGGGA28700.06.09760770
AGTGTAG15152.226625E-85.775621467
GTGTAGG37200.05.739291769
CGTGTAG41900.05.596701668
GTCGTGG9858.680921E-45.3299970
TCGTGTT14156.8720274E-65.19438670
AGAGTGT19152.4072506E-85.117532370
CGTCGTG69150.05.010884370
Produced by FastQC (version 0.11.5)