FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_WOX11_c24_b-2d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_WOX11_c24_b-2d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6073322
Sequences flagged as poor quality0
Sequence length76
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAAGC9900.09.54542370
GTAGGGG5151.0217678E-48.155313570
AAGCGCG6958.23411E-78.05752870
AGAGCGG5502.1906209E-47.636338770
GAAGCGC7502.073895E-56.999976669
GGAAGCG8158.952038E-66.871143368
GTAGGGA57300.06.657918570
GGGAAAG49500.06.646442468
ATCTCGG10652.4954352E-76.57274870
TGTAGGG67000.06.373113669
GTGTAGG76050.06.35106470
TCGTGTT29200.06.23285670
CCACCCT6450.009661215.96902228
GTCGTGG19102.0008883E-115.86385570
CGTGTAG82450.05.73072769
GGAAGAC12851.1746088E-65.719825370
TAGGGAA63800.05.70531169
AGGGAAA74450.05.64135170
GATCTCG11302.9764275E-55.57520369
GGAAAGA72150.05.530127569
Produced by FastQC (version 0.11.5)