FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_WOX11_c24_b-2b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_WOX11_c24_b-2b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6073322
Sequences flagged as poor quality0
Sequence length76
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAAGC9950.09.49745770
GCGTCGG3100.00684641169.03222870
AAGCGCG7009.177402E-77.999974370
AGAGCGG5401.7717374E-47.77775270
GTAGGGG5057.3891843E-47.62373870
GAAGCGC7351.5623733E-57.14283469
AGCGACG5450.00166133837.06419768
GGAAGCG8251.0723377E-56.787856668
ATCTCGG10652.4954352E-76.57274870
TCGTGTT28850.06.551105570
GTAGGGA57050.06.503046570
GGGAAAG48950.06.29211468
TGTAGGG66550.06.25843269
GTGTAGG75100.06.198381470
CCACCCT6300.00757512036.111141728
CGTGTAT23050.05.9218970
GTCGTGG19252.5465852E-115.818162470
TAGGGAA63600.05.723251369
AGGGAAA73950.05.632165470
GATCTCG11252.7729646E-55.599981369
Produced by FastQC (version 0.11.5)