FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_TGA5_LEHLE_f-2e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_TGA5_LEHLE_f-2e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1201602
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTGCCC950.00721078918.4210531
AGAGCGG1957.83621E-616.15384770
CGCGAGC1400.003754052615.00000129
TAGACGA2650.001869932310.56603737
CGAACAG2350.00925283110.42553252
TCGGAAC3055.1692215E-410.32786970
AGTGTAG9550.09.16230469
GTGTAGA9600.09.11458370
TGTAAGG3150.0077989088.88888870
GAGTGTA10452.3708708E-87.033492669
ATGTTGC5250.0090245296.66666613
GGGAAAG19200.06.562567
AGAGTGT13207.2814146E-96.363636570
ACGTATG6100.0054105756.31147581
TGTAGAT15458.62201E-106.11650569
GTGTAGG28050.06.114082370
AGGGAAA23550.06.09341866
CGTGTAG32550.06.021505470
GTCGTCA8902.2014917E-45.8988761
TAGGGAA21351.8189894E-125.737704870
Produced by FastQC (version 0.11.5)