FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_TGA5_CS70000_f-2e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_TGA5_CS70000_f-2e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1097009
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCAGGG400.00241940134.99995433
GCGTGCA950.00721045418.42102816
AGAGCGG2108.581628E-716.66664570
GCGTCGG1600.00909580313.12498370
CCTTGGC3700.00301760188.51350325
TGTAGGG25300.07.88536570
AGTGTAG7603.7712016E-77.828936669
GTGTAGA8151.391727E-77.730051570
TCGTGTT8705.1200914E-87.64366870
AGAGTGT11001.382432E-107.636353570
TGGAGGG5108.192764E-47.5490169
GTGTAGG27750.07.1891869
GAGTGTA8301.5260048E-67.168665466
TTGCTGT4950.0051053327.07069822
GGGAAAG18400.07.038034468
GTAGGGA19300.06.89118370
CGTGTAG31100.06.639862568
GTCGTGG9157.024444E-66.50272470
TAGGGAA18850.06.498665366
GAAAGAG21750.06.436773370
Produced by FastQC (version 0.11.5)