FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_TGA5_CS70000_f-2c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_TGA5_CS70000_f-2c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1097009
Sequences flagged as poor quality0
Sequence length76
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCAGGG400.00241940134.99995433
GCGTGCA950.00721045418.42102816
AGAGCGG2108.581628E-716.66664570
CCTTGGC3700.00301760188.51350325
TGTAGGG25400.07.854320570
AGTGTAG7704.6450987E-77.727262569
GTGTAGA8201.5423029E-77.682916670
TCGTGTT8705.1200914E-87.64366870
TGGAGGG5057.3749595E-47.62375269
AGAGTGT11051.5279511E-107.601870
GAGTGTA8251.3872486E-67.212111566
GGGAAAG18500.07.189179468
GTGTAGG27950.07.13773769
TTGCTGT5000.0056287056.99999122
GTAGGGA19450.06.83803770
TAGGGAA19000.06.6315766
CGTGTAG31250.06.60799168
GTCGTGG9106.450684E-66.538452670
GAAAGAG21950.06.53757770
CGTGGAG7105.6863425E-46.408442567
Produced by FastQC (version 0.11.5)