FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_TGA5_6911_f-2e.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_TGA5_6911_f-2e.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1064576
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTAGCG800.002667039621.874973
AGCGCGG1554.0548356E-415.80643170
GCGTCGG2701.1647393E-512.96294670
GCACTTA2254.7483773E-412.444427552
CGGAAGC6400.012.03123470
CTCGCCC2500.001149832911.199985524
AGAGCGG4451.3935096E-711.01122170
CGCCCAA2550.001356728510.98037826
TGCGGAG2250.006700129210.88887444
GTAGGGG2600.001595325710.76921670
CCCATCC3004.437684E-410.4999867
CTAGTAC2350.00925175710.42551813
CTGCGGA2700.002184140310.37035743
AGAGTGG3259.2638243E-49.69229568
TAAGCCT7251.9199433E-88.68964352
TAGGGAA17650.08.52690170
GTAGGGA17750.08.084496569
GCTAGAT4500.002010767.77776758
TGTAGGG24900.07.730913670
GTAAGCC4550.00224137357.692297551
Produced by FastQC (version 0.11.5)