FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_TGA5_1741_f-2b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_TGA5_1741_f-2b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1270377
Sequences flagged as poor quality0
Sequence length76
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGG2001.7544768E-413.99951270
GAGTGTA8951.02154445E-87.820956767
AGTGTAG8402.3131179E-77.49973970
GGGAAAG16100.07.39104769
GTAGGGA18900.07.036791370
TGTAGGG21650.06.95125969
TCAGTAA5200.0082291576.730799730
GTGTAGG24050.06.54862868
GTCGTGG7802.5933076E-46.28183270
GGAAAGA21900.06.2326670
CGTGTAG25900.06.08086968
GTGTAGA8154.565472E-46.0120668
TCGTGTT9356.690745E-55.98909670
TAGGGAA18101.7644197E-105.80090367
TCGTGTA37000.05.77006969
GAAAGAG20957.2759576E-125.67999369
AGGGAAA21306.91216E-115.42234668
GCCTAAG14955.996062E-75.3846456
AAGAGTG14956.000755E-75.38442870
GTCGTGT42500.05.352754668
Produced by FastQC (version 0.11.5)