FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_TGA5_1741_f-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_TGA5_1741_f-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTCTTACCTCACCTTGATGCTATGCTTTTACTATACTATCAGATTAGC15.555555555555555No Hit
CTAATTCAGTAAACCTAGGGTATTGATAGCCGACGATACGTTAATATATA15.555555555555555No Hit
CAAGCTTTGATCTAGTGATTCACCAAAATGGTTTCTTTGAATGATGAAGT15.555555555555555No Hit
TAGTTCTATGGATCAATCTCTCCGTGGTAAGCATTTCTAGTAACTCAACA15.555555555555555No Hit
TGGCCTATCGTTCCTTTAGCCCTTCGGAATTAGACGCTAGAGGTGTCAGA15.555555555555555No Hit
CTCGAAGCAAATACACCTCCGTAGAATTATTCAGCTGCATTCATTACCGT15.555555555555555No Hit
GGCTATAAAGCTATATAGGGGTGGGTGTGTGTAGTGGGAATTTTGCCCGC15.555555555555555No Hit
ATTCAACAATTCTCTCTGGATGCTTCTTATTGTCGCGCTTTGAGATCTCA15.555555555555555No Hit
CTACGTCATAGACGTGGCGTCATATATAAAGCAAGTGGGAGAGATATGTG15.555555555555555No Hit
GTGAATGAAAAGAAAATAAACCTTTTGCATAAGACATTACCAATCCATTC15.555555555555555No Hit
AATGTGGTCTTGTTGGTGATATGTATTCTCCTTTTGTAGACAGTTTTGAA15.555555555555555No Hit
CAATCTTGGCTAACAGGGCCATAAGATGCTGGACAAAAGCTCGAGTCATA15.555555555555555No Hit
CGTCAAAGACCGTCGAGAGAATCCCAGCGGTTTTATGGGAAAGCTTCACA15.555555555555555No Hit
GATATAAGTAATATCTAATTAACGTTACATGTCCGACACGACCGCAAATT15.555555555555555No Hit
CCGCGGATCATCAAGCTCCTTTCGTCCCCTCTGTAGAGGTGTTAGTGAAG15.555555555555555No Hit
ACTGTATAATTTTCTTCCCTTATATATGCATTGCGAAAGAAAAATGCATA15.555555555555555No Hit
ATCAGCGGAAAAAAACTGTCGCTTTCGTTCACTCTCCACGGGCACACACC15.555555555555555No Hit
TTTATCGTTCATGTGTATAATTTACATTAACAATTAAGTAATAGAGTTAG15.555555555555555No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)