FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_MGT1_c24_b-2b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_MGT1_c24_b-2b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7233138
Sequences flagged as poor quality0
Sequence length76
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCGCC1755.2641553E-922.00016644
CGCCGTA4850.021.6493547
CCTGGAC9400.018.98924364
GGTCGCC8400.017.50013244
GCCGTAT7300.016.78071648
CCTGGTG13800.016.48540550
GCGTCGG11350.016.34362270
AGAGCGG20050.014.48878770
GGACGAT13650.013.84616267
CTGGACG12000.013.70824665
TGGTCGC11150.012.87005143
GTCGCCG9800.012.8572445
CCCTCGA17000.012.55883132
TCCCTCG18000.011.86111831
CTGGTGG18700.011.791368551
CCTCGAC18400.011.60326833
GGTGGTC16000.011.59383741
GTGGTCG14400.011.423696542
AGTCCTG18300.011.28408247
CGCCCTA2500.001151285111.19992847
Produced by FastQC (version 0.11.5)