FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_LHY1_col_b-2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_LHY1_col_b-2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences163
Sequences flagged as poor quality0
Sequence length76
%GC29

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATGCATACTCTCTTTGTAAAAGTCACTATTTTCGCTTTCATTCTTATTA10.6134969325153374No Hit
TGGTCTTTATTTACTAGGTGATCATATTTAATGGGCTTTAAGTTTAATGT10.6134969325153374No Hit
AGTGAGCCAATACTGAAAGCTCCACCAAACTACAACGACAAACAAAACAT10.6134969325153374No Hit
TGGTCGTTCAGGCAAGTCTTGTCGTCTTCGTTGGTGTAGATCGGAAGAGC10.6134969325153374No Hit
TGAATCATTTTGGTCCTTTTATAATATGGGTCTGAACCAGTGTAACAGAT10.6134969325153374No Hit
TATATAGTTTACAAATTTTTTTAATATTTATAGGTATCAAAGCGGATATC10.6134969325153374No Hit
ATTTGTCCAAAAAAAAAATTGTATTATAAAAACATATGACCTTAATCTTG10.6134969325153374No Hit
AATCTTCTTCGTTTTTTTGTTTAGTAAAAATCTCTATGAAACTTACAAAA10.6134969325153374No Hit
AAATCAGAACATGGAGATCAAAAGCATTCAGATTTCATTTTCTCGAGAAA10.6134969325153374No Hit
ATTTATACTCAAAGATGGCGTTCCCTGTCTTGAGATTAAACTCATGTGTG10.6134969325153374No Hit
AAATAATATTTCAATTTCTAGGCAAGTAGCCAGAAACTTACCTTCGTTTC10.6134969325153374No Hit
CATACGACTTTCATCGACTACGGCGTTCCACAGAATTATATATGTATCTC10.6134969325153374No Hit
ACTGTTGTGATTAGGCATTACCAGATACTTTATATCTGGTTAGAAGAAGA10.6134969325153374No Hit
AAATTATTTTTACGTATTTAATCTACTTTTGAGTAAATTTGAGTAAAACA10.6134969325153374No Hit
ATAAGCACCGGCTCTGCCATTATGGACCACCGGCTCGACCAGTATGCTTG10.6134969325153374No Hit
ATATTTTAAACAAAAAAAACAATTTAATTCCAATATTTTAGAAAATATTC10.6134969325153374No Hit
ATACAACTTCTCGCAGCCATTCTTTGTTATGTGGGATAGGATTCTCGGCA10.6134969325153374No Hit
TTTATTATATTTTCCAAACTGTTATATTTATCTTCTAAAAATCTGATCAC10.6134969325153374No Hit
GATATATCTAATCCATGCATAATATCATGAAAAATGGCTACAAATTTTTG10.6134969325153374No Hit
GTTTTTAGTCTATACTTTTTTGGATGTGTTTGAAATCCTACAGGAGATGT10.6134969325153374No Hit
TTAGAAAAAAAAAAAAAAAATAATAATCAGAGATAAAAAAACTTGATATT10.6134969325153374No Hit
ACTTTGGAATAAAATATTTAGTTTAAGTCCATTGTGCTATTGTATACATG10.6134969325153374No Hit
TTAAGATATTTCAGTGGGATATTTGTGAGGTGTGACCCTCCATATGTGTA10.6134969325153374No Hit
TGGGAGTAATTTTTGCTTAAAGATTAAGATGCTTTTTTGTTATGTACCTC10.6134969325153374No Hit
ATTGGTTAAATGTTGAGATATTAGTGTATATATTAAATGTCATACTAATA10.6134969325153374No Hit
AAGATATTAAGGCTTCCCTGATGTACAAAATCAAGTATTCTGTTAGGATG10.6134969325153374No Hit
TCAACTTTTTACCTTAGCTCAACCGGTTAGTGCAAAATGTTGTTGCATCT10.6134969325153374No Hit
AACAAATATTTTTGAATTGAATATATTATAACAAAATCTGACATTGCAGC10.6134969325153374No Hit
TATTTTGTACGAGAGAAGGCCCGCCTATTTAGGCGGGTGTAAGAGACAAA10.6134969325153374No Hit
CATCAAGAGGTTAGTCCATTTTCTTATCAAATTTCTTTTTTTACGGTGAA10.6134969325153374No Hit
TGCGAGTTGGTAAGTACTAAAATTATAGATATTTATCCACGATATTTTCA10.6134969325153374No Hit
ATTAATCGCGTGAAGGGAGTCACGATAGAGACAAAAGGAGGCCAGTTACG10.6134969325153374No Hit
TTTTTTTATATACATATAAAAAGATATTTAGGCTATGTAATGGACAACGC10.6134969325153374No Hit
TTATTAATTTTCAAAAAATTAACCAAATAAAATAAACAAATTATATTTGA10.6134969325153374No Hit
TCTTAGAATCCTGATTGGTCCAAGCTTTGTCCTGATATTTTGATAAATCT10.6134969325153374No Hit
TTCACTTGTGAGACTAAACAATCCAGGAGAAACAAAAGACAAGACTTGTC10.6134969325153374No Hit
ATTATATTATTTCATATATATTATAAAAAATCTTAAATTTTTCTTTTTAC10.6134969325153374No Hit
TATCTAATGAAACCGTCGCTGGAATTGATATCTCATTTAAAGAGAAAGAT10.6134969325153374No Hit
TACTCCATCCGGTTGTAAGAAGGTGCCGCCGAGGCGTCCCTCTATAAATA10.6134969325153374No Hit
ATTTAGATATTTTGAGGGTTTGGTATTTTCACATTAGAGATTTCGAATCT10.6134969325153374No Hit
AAGGCTGGTTAGTGTTTTAAACTCGAATATGACTTGATGTCATGTGTATC10.6134969325153374No Hit
AAGATATTTATAAAAAAGAAATAGATGATATTTTAGTTGATGTAATAAAT10.6134969325153374No Hit
ACTAGTCTGAAACGATAAATTATATCTATGGATTATCTATATATCGCTAT10.6134969325153374No Hit
AGCTCGATTGAGAAATTTTTTTTCTTTGTTCAATCAGGCACCTCAAGGTG10.6134969325153374No Hit
CATACCTATCCACATTCCCAACTATAGAAAACACTCTCACCAAGATTTAA10.6134969325153374No Hit
TTCAACAAAATATTATGAAAAAGATGCAACATTTTCTATTTTGTTATGTT10.6134969325153374No Hit
TTCTATGGATAAAAAAAGATTTAATTGATAGAGGAAGCACCGTAAAGATC10.6134969325153374No Hit
AGCATGGGAATACTAAGGTTAGAGTTTCTGTAATTACTTGATTGTCTGTC10.6134969325153374No Hit
TTTTCGTCATTTTCACCTAATGGTTTAAGTATATTTAGACCAATTTGTCA10.6134969325153374No Hit
AGATATGCAATCCCAGATATTAAAGTTTACTTACTGTTAGATAATTCAGC10.6134969325153374No Hit
ACAAACAAAAATCATAACAAGAAGAGATCGTAGATGACTAAAGACAGACG10.6134969325153374No Hit
TTAAAAAAAAAGAATCTGCAAAATCTTTTTAGCAATTGTGTATTGAAGTG10.6134969325153374No Hit
CCTCTTGGAAAATATATTCATTTCGGTGAAATCTAAGTGTTGAGCTCGCT10.6134969325153374No Hit
TAATTATCGTAGATTTAACGATTTTAGTTTTCGCATAAATCTTTTTGTTG10.6134969325153374No Hit
CCTTGAGAGGAAAAGCTCCTGTTGAGCACTTTTTGCACTCCGTATGTCCT10.6134969325153374No Hit
AATTATAAAAATAGCAAAAATAAGAAAAGTAAAATGAAAGTAGTGTATGA10.6134969325153374No Hit
TTTGTAATTAATGTAAAAAAAGATATTTTTAGTTTATATATTATTTATCT10.6134969325153374No Hit
CATTCAAATATCTTATGAGAGTGTAATGACGTAATGTAGATAAAGGAATA10.6134969325153374No Hit
ATCTACTATCTAATAAAAATCATTAAATTCATTTAATTGTAAAATCTAAT10.6134969325153374No Hit
ACCATTTTACTTATATCAAATACACATTTAGTAATTGATACACAACTTTA10.6134969325153374No Hit
TGAATTCACTTCAATACACAATTGCTAAAAAGATTTTGCACATTCTTTTT10.6134969325153374No Hit
TATGAACTTGTTGAACAAAAAGATATATATAGACATAATATATATGTTTG10.6134969325153374No Hit
TTTAGGCAAAAAACAAATTACAAAGTGTTCTAATTACGAAAACGATATTC10.6134969325153374No Hit
AAATCAAATTAAAAATATTTTTCACAACCGGTTAGTAATTTGTTACCCGA10.6134969325153374No Hit
AATGATTAGTAGCTAAAATCTTGGTGAGCAAGTTTGGAAGATCTTGGAAA10.6134969325153374No Hit
TATTCCTCACCCTCAATAATTTATTATATAAATATCAATTTAGGAGAATA10.6134969325153374No Hit
CTAAACCAGACCTATATGTATCTAGTAGATATTTACACACATCTATGATC10.6134969325153374No Hit
ATCTTAAAACATCAGTGCTGGATATTTTCAAGGCGATGTAGATGTTCCTT10.6134969325153374No Hit
AATTTTGTTGAGTACTAAGATCTCGATCTATTGATCTTTTACGCAATCAA10.6134969325153374No Hit
TTTTGGTAGCCATACTAAATCTGGATCAGTTCTATTTCCTAAATTTTATC10.6134969325153374No Hit
TATGCAGAGAAGGGAAGAGAGAGTAGAAAATAGATATCTGTTGCGTGAGC10.6134969325153374No Hit
TTTTCCCAAAACAATACTATGAATGGGGTTAAGATAGGAAAGATAATATG10.6134969325153374No Hit
TGTAAGTACACTCTCAATTTTTATCCTTTAGTAACTTCTATTCATTTTTA10.6134969325153374No Hit
GAATATTTTTGAAGATGATATACAATCAAAGACTGAAAGTTAGGAAGGTA10.6134969325153374No Hit
TTTTAGGAACATTATTCAATGAGAAACTACTGTGGAGCTGTTTTAGTATA10.6134969325153374No Hit
TACGAAAAATCCTATTTCAATTTCGAGATTGTATGTTTAGTTCCTACAAA10.6134969325153374No Hit
ATGCTTTTTTTTGGATTTCAATTTAGATATGAATTGGAATTTGATATGTT10.6134969325153374No Hit
TATTTGATATTTAGTTATTTACCAATATCTAAACTATTATTTACACAATA10.6134969325153374No Hit
GATAAGCATTCTTGAGATTGACCCCCAAAAAAAGATAAGCATGCTTGATG10.6134969325153374No Hit
CTCAGCTTTAAGACTTGTAATCGCATGCAGAGAAAGCATATTAGCAGTCC10.6134969325153374No Hit
TAATATTTATGTGAGATATGTGTCTGCGGGTTTTTCTAATTTGACTAATA10.6134969325153374No Hit
CATAGGGAGTAACACGACACATCACCGGTTATTCAATAATTAGGGTTTGA10.6134969325153374No Hit
ATGGAGATTTCTTGAAGATCATCTTTAACAAGATAGCAACTAAGTGGTAG10.6134969325153374No Hit
ATATTGAGAAGATATAGAAAAAGCCAAGAAAATATTGATAGTGGCTAAAA10.6134969325153374No Hit
AAAAGTTTTTTTATCATAAAAACTTTATATTTAAAATCTGGATAATGACA10.6134969325153374No Hit
TGATTGCAAGCGTTGTTTTATTTCAGTTGTAACAAGTGATTTTTTTGGAA10.6134969325153374No Hit
TCCAATTATTCCATCCGATACTAACTGTTCTGTCTGACATAATTATGTGT10.6134969325153374No Hit
AATAAATAAATATAGATTTTTTTATTACAACTCTTAGAATCTGCGGTTCT10.6134969325153374No Hit
CACTATATTAAATCTCAAAAGTATATTATCATACAAGGAATTCCAATCGC10.6134969325153374No Hit
CTAAACATTTTTGCTGGTCCGTATCCAAAGTCTAGTTACTTGAAATATCG10.6134969325153374No Hit
AGTTCGCTCTTCACAAGAATAGATTTCATCCCTTAATGATTTTTCCTAGT10.6134969325153374No Hit
TATAGAAGACGAAGTTTAGTCACAATACCCAATCCAAGATATCATATATC10.6134969325153374No Hit
AGATTAATTGAGGCAAGTGTGCAGGAGATCTACAACGATGTACAATTATA10.6134969325153374No Hit
TCCCAATACCATTTATGGGTAAAAGAATAGAGATTGAAAGAAATAACTCT10.6134969325153374No Hit
CATTCGTAAATCAGTAATTTTTATCCCCGAATCTCCAAATTGAAATACAT10.6134969325153374No Hit
GAAATATCTTAAAGTTTCCAACGCAGCCGGTGGAATCTTTTTGATTCGTA10.6134969325153374No Hit
CAATACATAAATCTCTATATAGTGATGAAAATATTCGAAAAGAAAATAAA10.6134969325153374No Hit
TTTACTTTTAACTTAGCTGCTGCATTTTGTGGTGTTGCCTGTTTTTAGTT10.6134969325153374No Hit
GAAAGAGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGAT10.6134969325153374No Hit
GGAAAAAACGGAGTCTTTGCCTAAAAAAATGCGTTGACAAAGGGCAGATG10.6134969325153374No Hit
TGTAAGATCTTAGTATAGATTTTTTCTTCTCAAAGTAGTAAACTTCATTT10.6134969325153374No Hit
AAGATCTCGCAGCAAAGCTCGCAACTACTCGCCATTAATTTACGGAGATT10.6134969325153374No Hit
TCATGGCATATGTATTCTCAATATATGAATTCAAAAATATATATTCAAAT10.6134969325153374No Hit
CAAAATTATATGGTTTTCATATAGCCTTATAAATATCATTATCTAGTGAT10.6134969325153374No Hit
TAAGAACAAGAAAAATCGTGGATTCAAAATTGATTTTTTTTTAATATAAA10.6134969325153374No Hit
CAGACGCACGAGGCGATCCCATGCCTGAAGCATTTTCTTGGTCTTGTAAG10.6134969325153374No Hit
ATTTATCTAGTCTTTGTGTTAGTATTAAATATTCAAAGATGATAATAAGT10.6134969325153374No Hit
AGAAAAACGGTTATAATCTCTATCTTCAATCCATTCAGATTTTTTTTATA10.6134969325153374No Hit
TAAGAATTTAATGTAAATAAAAATCCAATGAGGATTATCATACACTGTCA10.6134969325153374No Hit
GTGAAGTTGATGGAACCTCCTCTTCTCTTCTCTTTTATGTTTTATATTAT10.6134969325153374No Hit
AAAATTCTGAATTAGCAGTCCTATTAATCTTTAGATCAAAATCAACCATC10.6134969325153374No Hit
ATGTAAATAAATAAATATTTGCTTTGTCTTTTGGAATTATTACTGATTTT10.6134969325153374No Hit
CTTGTCCTATACACTCTCTAACATGTCATTTTGTTCTCTATTTCTCTCTT10.6134969325153374No Hit
AAAGAACATAAACTTCTCATACGAATTAGTAAGTCCTGATTATTGCTAGC10.6134969325153374No Hit
ACTTAAATTATATAGGAATTCTTGAACCAAAGAATTCAGAATAAAAACCT10.6134969325153374No Hit
ACTTTGGTTCGCTACAATAAGAAACACCAAGGGCGAGAGTAAAGAGAATA10.6134969325153374No Hit
GTAAGAGATATAATATTCTCTGATTGATATCTTAAATGGATATTACCTAC10.6134969325153374No Hit
TGCTTTTAAATGTGTAAGTGTAATCAAACTCCGTCTGACCTTCACACTTT10.6134969325153374No Hit
AAATTTCAGCTATTAGCAATGTATATAGAAAAGGTACATTGAGTTATACT10.6134969325153374No Hit
GGAAATATAGTACATAAAAATTATACAAATACTAAAAGTAATGTTTTAAG10.6134969325153374No Hit
TTTTATATGGGGAAAATTATGAGCAAGGAACTATTGCACTGCATATCAAT10.6134969325153374No Hit
AGACACAATTTTTTCTGAAGAATTCGCCAGGATATATCTAATCCATGCTG10.6134969325153374No Hit
CAAGAAGAAGATATTTGTTCTCGATCCGTGTGGTGATTGATATCATGTTG10.6134969325153374No Hit
ATATGATATACAAAGATATGAGGAGTAAAATATCCAAACTCAGTATAACA10.6134969325153374No Hit
ATATATAATTAATATGAAAAATGAGATATTATCTGTTTAGGACAAAGATA10.6134969325153374No Hit
AGGGTTTTTGTTTATTTCCGATTATTTTATTGTTTTTAGGAAATTTATCG10.6134969325153374No Hit
GTACTTTAAGTGAGCAAAAAATCTTATGTTTGGACAATATAAAAAGATTC10.6134969325153374No Hit
ATATCAGCACCCCATTTTTCATTAGTTGATCTGTATTAGGATATACTTCA10.6134969325153374No Hit
TCCTTTCAACGGGAGAGATCGGGTTGCTTCATGATGTTTTTTAACGTGCT10.6134969325153374No Hit
TCGTACAAACTCACACGCGCTTAGATATTTTACCTTTACTTACACGCGCA10.6134969325153374No Hit
TAATCCAACGAAAAGCTACACCAGGCCCAGCATCCAGCTGCTCTGATGAG10.6134969325153374No Hit
TAAATAGATAGCAAATAATTTTTGACAAAATGACATGTATGTTTTCTTTA10.6134969325153374No Hit
TTATACTAAATATTAGAATAAATTTGATATACTAAACTTATAAATATATA10.6134969325153374No Hit
CAGGCATTAACTTTTGAGCTACATTAAAACATACACCAACTGATTTTACA10.6134969325153374No Hit
GTCTATAAGTCAAGTATATATAATAGAAAGAAGTATCTAACTAATATCTG10.6134969325153374No Hit
CAAGTTGTGAGAGTAATAGAAGATATTTCCAGACACCTTAGTGCAGAGAA10.6134969325153374No Hit
AATTTAGTAACTTTTAAAACATTTCTATAAGATTCTTTTTTCTAGAAAAT10.6134969325153374No Hit
TGGAGATAACAAATTTGCAAAGATATTTTGATAGGCCATTCTCTTGCAAT10.6134969325153374No Hit
GGTGTAAACTCGAATTTGTTTTCTAACTTCGGTTTTCATATAGATTTTTG10.6134969325153374No Hit
TTTAACAGCTAGTTGCATACGAACTAATATTTACACATCCATATAAAATC10.6134969325153374No Hit
AAGATATATCGGCAAGGCTACTAGAAAGTGAAATTTAATTTAATGATTCA10.6134969325153374No Hit
ACTCCTACGCCCAGATGTTAATATCCCCATTTCAGAGACCAACCAAATAA10.6134969325153374No Hit
ACCCCGTCACCAAACGACACGTGATATAAAATATCTCTTCCTTTACCAGT10.6134969325153374No Hit
ATAGGATTTAAGCATAGCTAATAATAATTGTTATAAGATTTAATATGATT10.6134969325153374No Hit
GTATTATTGAATCGTTTTTAGGTTCATGTAATTCATATATTTCTCTCTGG10.6134969325153374No Hit
GTTCGATTTTGTTTAGATTCTAAAGATGTTTTTTCGTTCATGCTTCTGAA10.6134969325153374No Hit
ATTGTTTTGAAATATAATTCTAATATTTTTTTGCTTAAAACTTGTATTTA10.6134969325153374No Hit
CATAGAGTATATATGTTGAAACAAATCTAGAAGTTCCCGATTGTGCAATC10.6134969325153374No Hit
TTTCATTCGCATTTATGATATTAATTAGTAAATTACTAGATTAATTTATT10.6134969325153374No Hit
ATATGTTTTTGTTTGGTATTGTAATATGGACTTAAAAAATATAGAAAAAT10.6134969325153374No Hit
GTTTCAAACGTAAGTAGTTCTGAAAATGTAAGTAGGAATAATCTTATTCA10.6134969325153374No Hit
GTAGCTTCAAACCCAGAGCTGATGATAGAACTTGATTAGATATTTTTTGT10.6134969325153374No Hit
CAAGACTAGATCATTTCAATGTATTTTTAAAAAGGATATTTAGATGAAAA10.6134969325153374No Hit
ATTTACCGTACCAATATGAAGCTAGACTAAGTTGTTACTTGTAAAGGGGC10.6134969325153374No Hit
CATATTTTGTGAAGTAACTTTCACAGATTGTTTTTTGAAGATATATGAAA10.6134969325153374No Hit
AAATCTGGATCATTTCTATTTCCTAAATTTTATCCTCTTTTCGCTAAATG10.6134969325153374No Hit
CATATTTTGGTTTTTTCGGTTTATGTTCGGATTAATATCAGTTATTCGGT10.6134969325153374No Hit
AATAATATCAACCATAACTAGATTCAAAAAATTAATATCAATCATAACTA10.6134969325153374No Hit
AATTAACAAGAATGGTTGAATGGTGCATTTGCGTTTTAGGTCTCATATGA10.6134969325153374No Hit
GGGGGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGG10.6134969325153374No Hit
AAATCAATCCTAACTAACCATATCTAGAATCCTAATTAATCTTAACTAAC10.6134969325153374No Hit
GTAGAATCTACTCTAGAAATAAAGGCAAAGCTTTTACATCAACAATGTTA10.6134969325153374No Hit
AGATAAGTTTAATCCACTCTGAATTTGACTCGAATTCCAGTTTATAAAAT10.6134969325153374No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers