FastQCFastQC Report
Thu 6 Dec 2018
HG3LMAFXY_n02_LHY1_c24_b-2d.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHG3LMAFXY_n02_LHY1_c24_b-2d.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4951402
Sequences flagged as poor quality0
Sequence length76
%GC26

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTTGCG2356.849443E-411.9157191
CGTCGTG34450.06.50210270
GTCGTGG7652.0206062E-46.405154770
GCGTCGT36350.06.354873769
GTAGGGA16003.1286618E-106.12499169
TGTAGGG19003.6379788E-126.078938568
GTCGTGT29400.06.071419769
AGCGTCG39600.06.010031770
GAGCGTC43700.05.92670570
CGTGTAG22500.05.911042770
CGGAAGA78350.05.85193869
GTGTAGG19809.094947E-125.833325467
AAGAGCG57950.05.79803570
GGAAGAG76600.05.66573170
TCGTGTA33150.05.49018869
TCGGAAG81150.05.47750368
AGAGCGT49300.05.466468370
TCGTGTT14056.047667E-65.231256570
GAAGAGC67300.05.148528670
CAGATCG19503.7045538E-85.025583370
Produced by FastQC (version 0.11.5)